{ "about": { "date": "2026-10-24", "python": "3.12.14", "oracle": "Python standard library: fractions.Fraction for elapsed time, hashlib SHA-256 for the source, payload and snapshot hashes, and the comparison's validation, verification and projection rules restated from Contract 11A", "method": { "id": "measured-comparison-time-alignment", "version": "1.0.0" }, "ruling": "docs/board/memos/2026-10-24-cso-bioreactor-stage.md, section 6 (SCI-186)", "generator": "pipeline/bioreactor-simulator/reference-measured-comparison-3.py", "generatorSha256": "f3e3ab454e55b26f3e92b78abb4d2e93158e1220ea6418c7b242cb722b414922" }, "conventions": { "canonicalJson": "Keys sorted by code unit, no whitespace, numbers as ECMAScript Number.prototype.toString, strings as JSON.stringify.", "inputHash": "sha256 of the canonical JSON of the growth input: v, sourceId, settings, readings, and source, example, history when present.", "payloadHash": "sha256 of the canonical JSON of the imported growth-review payload with source.analysisRef set to null.", "snapshotHash": "sha256 of the canonical JSON of the snapshot without key and contentHash.", "elapsedHours": "(entered time - anchor) / (1 for h, 60 for min) on the entered decimal values as exact rationals, rounded once to binary64; -0 is 0.", "tolerance": "0 when the entered time, the anchor and the result are binary64 numbers; otherwise (ulp(time) + ulp(anchor)) / divisor + 2 ulp(result).", "expand": "Reading i (0-based) of a rule is {id: idPrefix + i, sourceRow: i + 1, time: i, ...template}, placed at path; the stored record's window and hashes already describe the expanded record; check expandedSha256 before running the case.", "operations": "validate: the record is refused at validation with code. verify: the record validates and verification refuses it. verify-and-project: the record validates, the pair verifies, and the projection is as expected." }, "base": { "v": 1, "kind": "measured-comparison", "sharedEventLabel": "Inoculation (OD600 = 0.15)", "slotA": { "slotId": "slot-a", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run A (hours)", "analysisRef": null, "revision": null, "inputHash": "sha256:0128fe82bc998798c63513a46d1a0d7b0dc4d7ed8eac3507c83b49eb3fd27003" }, "growth": { "v": 1, "sourceId": "source-slot-a-run-a", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "h", "responseLabel": "OD600", "window": [ 0, 2 ] }, "readings": [ { "id": "a-1", "sourceRow": 1, "time": 0, "response": 0.15, "role": "sample" }, { "id": "a-2", "sourceRow": 2, "time": 1, "response": 0.31, "role": "sample" }, { "id": "a-3", "sourceRow": 3, "time": 2, "response": 0.64, "role": "sample" } ], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:6d4f7385ff1c09604508e62b0265a0d82880058483e6243772b5fe0d0ca9e6ce", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 0, "sourceTimeUnit": "h", "basis": "Inoculation recorded at 0 h in bench log" } }, "slotB": { "slotId": "slot-b", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run B (minutes)", "analysisRef": null, "revision": null, "inputHash": "sha256:a294ba4c895209f9c19297e04363b4fe314aae460ece0c30c37168fca07d386e" }, "growth": { "v": 1, "sourceId": "source-slot-b-run-b", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "min", "responseLabel": "OD600", "window": [ 30, 150 ] }, "readings": [ { "id": "b-1", "sourceRow": 1, "time": 30, "response": 0.14, "role": "sample" }, { "id": "b-2", "sourceRow": 2, "time": 90, "response": 0.29, "role": "sample" }, { "id": "b-3", "sourceRow": 3, "time": 150, "response": 0.61, "role": "sample" } ], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:b57f11c262effd792333dea6fa4e398d007c4aef5a0a9e2f2c8bc8ce2d4095c1", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 30, "sourceTimeUnit": "min", "basis": "Inoculation at 30 min after pre-warm" } } }, "cases": [ { "id": "refuse-malformed-unknown-key", "kind": "refusal", "description": "The base comparison with one unknown top-level key, notes; everything else verifies.", "operation": "validate", "input": { "v": 1, "kind": "measured-comparison", "sharedEventLabel": "Inoculation (OD600 = 0.15)", "slotA": { "slotId": "slot-a", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run A (hours)", "analysisRef": null, "revision": null, "inputHash": "sha256:0128fe82bc998798c63513a46d1a0d7b0dc4d7ed8eac3507c83b49eb3fd27003" }, "growth": { "v": 1, "sourceId": "source-slot-a-run-a", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "h", "responseLabel": "OD600", "window": [ 0, 2 ] }, "readings": [ { "id": "a-1", "sourceRow": 1, "time": 0, "response": 0.15, "role": "sample" }, { "id": "a-2", "sourceRow": 2, "time": 1, "response": 0.31, "role": "sample" }, { "id": "a-3", "sourceRow": 3, "time": 2, "response": 0.64, "role": "sample" } ], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:6d4f7385ff1c09604508e62b0265a0d82880058483e6243772b5fe0d0ca9e6ce", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 0, "sourceTimeUnit": "h", "basis": "Inoculation recorded at 0 h in bench log" } }, "slotB": { "slotId": "slot-b", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run B (minutes)", "analysisRef": null, "revision": null, "inputHash": "sha256:a294ba4c895209f9c19297e04363b4fe314aae460ece0c30c37168fca07d386e" }, "growth": { "v": 1, "sourceId": "source-slot-b-run-b", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "min", "responseLabel": "OD600", "window": [ 30, 150 ] }, "readings": [ { "id": "b-1", "sourceRow": 1, "time": 30, "response": 0.14, "role": "sample" }, { "id": "b-2", "sourceRow": 2, "time": 90, "response": 0.29, "role": "sample" }, { "id": "b-3", "sourceRow": 3, "time": 150, "response": 0.61, "role": "sample" } ], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:b57f11c262effd792333dea6fa4e398d007c4aef5a0a9e2f2c8bc8ce2d4095c1", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 30, "sourceTimeUnit": "min", "basis": "Inoculation at 30 min after pre-warm" } }, "notes": "Unknown top-level key" }, "expected": { "ok": false, "stage": "validate", "code": "malformed-comparison-payload", "rule": "envelope: v 1, kind measured-comparison, known keys, a clean label" } }, { "id": "refuse-malformed-kind", "kind": "refusal", "description": "The base comparison with kind measured-comparison-v0.", "operation": "validate", "input": { "v": 1, "kind": "measured-comparison-v0", "sharedEventLabel": "Inoculation (OD600 = 0.15)", "slotA": { "slotId": "slot-a", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run A (hours)", "analysisRef": null, "revision": null, "inputHash": "sha256:0128fe82bc998798c63513a46d1a0d7b0dc4d7ed8eac3507c83b49eb3fd27003" }, "growth": { "v": 1, "sourceId": "source-slot-a-run-a", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "h", "responseLabel": "OD600", "window": [ 0, 2 ] }, "readings": [ { "id": "a-1", "sourceRow": 1, "time": 0, "response": 0.15, "role": "sample" }, { "id": "a-2", "sourceRow": 2, "time": 1, "response": 0.31, "role": "sample" }, { "id": "a-3", "sourceRow": 3, "time": 2, "response": 0.64, "role": "sample" } ], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:6d4f7385ff1c09604508e62b0265a0d82880058483e6243772b5fe0d0ca9e6ce", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 0, "sourceTimeUnit": "h", "basis": "Inoculation recorded at 0 h in bench log" } }, "slotB": { "slotId": "slot-b", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run B (minutes)", "analysisRef": null, "revision": null, "inputHash": "sha256:a294ba4c895209f9c19297e04363b4fe314aae460ece0c30c37168fca07d386e" }, "growth": { "v": 1, "sourceId": "source-slot-b-run-b", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "min", "responseLabel": "OD600", "window": [ 30, 150 ] }, "readings": [ { "id": "b-1", "sourceRow": 1, "time": 30, "response": 0.14, "role": "sample" }, { "id": "b-2", "sourceRow": 2, "time": 90, "response": 0.29, "role": "sample" }, { "id": "b-3", "sourceRow": 3, "time": 150, "response": 0.61, "role": "sample" } ], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:b57f11c262effd792333dea6fa4e398d007c4aef5a0a9e2f2c8bc8ce2d4095c1", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 30, "sourceTimeUnit": "min", "basis": "Inoculation at 30 min after pre-warm" } } }, "expected": { "ok": false, "stage": "validate", "code": "malformed-comparison-payload", "rule": "envelope: v 1, kind measured-comparison, known keys, a clean label" } }, { "id": "refuse-aggregate-bytes", "kind": "refusal", "description": "Two sources of 2,000 readings each (4,000 in all, within the reading bound), every reading excluded with a 480-character reason. Each source alone is a readable drybench.growth-review under its own 2,000,000-byte limit; the record together exceeds the comparison's 2,000,000-byte bound. Stored without its readings: expand by the rule, then check expandedSha256.", "operation": "validate", "input": { "v": 1, "kind": "measured-comparison", "sharedEventLabel": "Inoculation (OD600 = 0.15)", "slotA": { "slotId": "slot-a", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run A (hours)", "analysisRef": null, "revision": null, "inputHash": "sha256:9de59d264220a974dd4eff8ba82d385fd1ec6126f3be6944132bcecbaebb23ef" }, "growth": { "v": 1, "sourceId": "source-slot-a-run-a", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "h", "responseLabel": "OD600", "window": [ 0, 1999 ] }, "readings": [], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:3e7267ff77d642de34fc79b2d87d79d45d11cdc06b2563d17989a3b3f59c7c82", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 0, "sourceTimeUnit": "h", "basis": "Inoculation recorded at 0 h in bench log" } }, "slotB": { "slotId": "slot-b", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run B (minutes)", "analysisRef": null, "revision": null, "inputHash": "sha256:b64d881c264e3a0263a58b97450f9af9904d6fb6569f4b6b79c42d6104d7b469" }, "growth": { "v": 1, "sourceId": "source-slot-b-run-b", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "h", "responseLabel": "OD600", "window": [ 0, 1999 ] }, "readings": [], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:effa32d08b990d13e36fac99d832fe373887221ec962e1959a80dba8dbdc2e24", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 0, "sourceTimeUnit": "h", "basis": "Inoculation at 0 h" } } }, "expected": { "ok": false, "stage": "validate", "code": "aggregate-byte-limit-exceeded", "rule": "the record exceeds 2000000 UTF-8 bytes", "perSourceUtf8Bytes": { "slotA": 1183357, "slotB": 1183359 }, "limitBytes": 2000000 }, "expand": [ { "path": [ "slotA", "imported", "growth", "readings" ], "count": 2000, "idPrefix": "a-", "template": { "response": 0.2, "role": "sample", "excluded": true, "exclusionReason": "Excluded on review: condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window conde" } }, { "path": [ "slotB", "imported", "growth", "readings" ], "count": 2000, "idPrefix": "b-", "template": { "response": 0.2, "role": "sample", "excluded": true, "exclusionReason": "Excluded on review: condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window condensation on the cuvette window conde" } } ], "expandedSha256": "sha256:f18a03ebb1e959f8b77c627b77ad2fab6cc3a07a2b0cd58bd8b5984f44d0969f", "expandedUtf8Bytes": 2367812, "expandedReadings": { "slotA": 2000, "slotB": 2000 } }, { "id": "refuse-aggregate-readings", "kind": "refusal", "description": "Source A with 2,001 readings and source B with 2,000: 4,001 in all. The combined bound (4,000) is twice the transport's per-source bound (2,000), so two readable sources can never exceed it; it is reached only when a source is itself over 2,000, and the combined count is checked before either source is read, so this code (whose message names both bounds) is given rather than invalid-growth-review-payload. Stored without its readings: expand by the rule, then check expandedSha256.", "operation": "validate", "input": { "v": 1, "kind": "measured-comparison", "sharedEventLabel": "Inoculation (OD600 = 0.15)", "slotA": { "slotId": "slot-a", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run A (hours)", "analysisRef": null, "revision": null, "inputHash": "sha256:e312fe394283ba683e3c2eb053da61c945f3d1e2061dcb66a1ad3ccf4f168c83" }, "growth": { "v": 1, "sourceId": "source-slot-a-run-a", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "h", "responseLabel": "OD600", "window": [ 0, 2000 ] }, "readings": [], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:462902f2c008034383292cb362ccb12d6625f9821b61e3d6cbe07d66e0f9a9cb", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 0, "sourceTimeUnit": "h", "basis": "Inoculation recorded at 0 h in bench log" } }, "slotB": { "slotId": "slot-b", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run B (minutes)", "analysisRef": null, "revision": null, "inputHash": "sha256:ff18f11b942b3c8433b9a2e71be18524c4d7a3df3e7376a24687a3320b419ef4" }, "growth": { "v": 1, "sourceId": "source-slot-b-run-b", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "h", "responseLabel": "OD600", "window": [ 0, 1999 ] }, "readings": [], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:5d64ae86066a82e01c529bfc247a0913a6c5c872a48420df818f65fe63406364", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 0, "sourceTimeUnit": "h", "basis": "Inoculation at 0 h" } } }, "expected": { "ok": false, "stage": "validate", "code": "aggregate-reading-limit-exceeded", "rule": "more than 4000 readings across the two sources, counted before either is read", "limitReadings": 4000, "perSourceLimitReadings": 2000 }, "expand": [ { "path": [ "slotA", "imported", "growth", "readings" ], "count": 2001, "idPrefix": "a-", "template": { "response": 0.2, "role": "sample" } }, { "path": [ "slotB", "imported", "growth", "readings" ], "count": 2000, "idPrefix": "b-", "template": { "response": 0.2, "role": "sample" } } ], "expandedSha256": "sha256:b51a5fb437d96de42e2580274c58bd9b65d5fb9cc98571b14720ee162808a301", "expandedUtf8Bytes": 299888, "expandedReadings": { "slotA": 2001, "slotB": 2000 } }, { "id": "refuse-invalid-growth-review-role", "kind": "refusal", "description": "Source A's second reading has role standard; its source and payload hashes are recomputed on the faulty record, so the transport reader is the only rule that fails.", "operation": "validate", "input": { "v": 1, "kind": "measured-comparison", "sharedEventLabel": "Inoculation (OD600 = 0.15)", "slotA": { "slotId": "slot-a", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run A (hours)", "analysisRef": null, "revision": null, "inputHash": "sha256:40dbef56b5f34e955d8a7f36baf465fae106059a1663077f6a3dce2fa74190c3" }, "growth": { "v": 1, "sourceId": "source-slot-a-run-a", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "h", "responseLabel": "OD600", "window": [ 0, 2 ] }, "readings": [ { "id": "a-1", "sourceRow": 1, "time": 0, "response": 0.15, "role": "sample" }, { "id": "a-2", "sourceRow": 2, "time": 1, "response": 0.31, "role": "standard" }, { "id": "a-3", "sourceRow": 3, "time": 2, "response": 0.64, "role": "sample" } ], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:6ac5a86adfb35be0fcf7863746b445c70a053e28d4f86095649107b97641daec", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 0, "sourceTimeUnit": "h", "basis": "Inoculation recorded at 0 h in bench log" } }, "slotB": { "slotId": "slot-b", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run B (minutes)", "analysisRef": null, "revision": null, "inputHash": "sha256:a294ba4c895209f9c19297e04363b4fe314aae460ece0c30c37168fca07d386e" }, "growth": { "v": 1, "sourceId": "source-slot-b-run-b", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "min", "responseLabel": "OD600", "window": [ 30, 150 ] }, "readings": [ { "id": "b-1", "sourceRow": 1, "time": 30, "response": 0.14, "role": "sample" }, { "id": "b-2", "sourceRow": 2, "time": 90, "response": 0.29, "role": "sample" }, { "id": "b-3", "sourceRow": 3, "time": 150, "response": 0.61, "role": "sample" } ], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:b57f11c262effd792333dea6fa4e398d007c4aef5a0a9e2f2c8bc8ce2d4095c1", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 30, "sourceTimeUnit": "min", "basis": "Inoculation at 30 min after pre-warm" } } }, "expected": { "ok": false, "stage": "validate", "code": "invalid-growth-review-payload", "rule": "slotA: the imported file is not a valid drybench.growth-review v1" } }, { "id": "refuse-invalid-growth-review-schema", "kind": "refusal", "description": "Source B's imported file names schema drybench.growth-review-v2.", "operation": "validate", "input": { "v": 1, "kind": "measured-comparison", "sharedEventLabel": "Inoculation (OD600 = 0.15)", "slotA": { "slotId": "slot-a", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run A (hours)", "analysisRef": null, "revision": null, "inputHash": "sha256:0128fe82bc998798c63513a46d1a0d7b0dc4d7ed8eac3507c83b49eb3fd27003" }, "growth": { "v": 1, "sourceId": "source-slot-a-run-a", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "h", "responseLabel": "OD600", "window": [ 0, 2 ] }, "readings": [ { "id": "a-1", "sourceRow": 1, "time": 0, "response": 0.15, "role": "sample" }, { "id": "a-2", "sourceRow": 2, "time": 1, "response": 0.31, "role": "sample" }, { "id": "a-3", "sourceRow": 3, "time": 2, "response": 0.64, "role": "sample" } ], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:6d4f7385ff1c09604508e62b0265a0d82880058483e6243772b5fe0d0ca9e6ce", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 0, "sourceTimeUnit": "h", "basis": "Inoculation recorded at 0 h in bench log" } }, "slotB": { "slotId": "slot-b", "imported": { "schema": "drybench.growth-review-v2", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run B (minutes)", "analysisRef": null, "revision": null, "inputHash": "sha256:a294ba4c895209f9c19297e04363b4fe314aae460ece0c30c37168fca07d386e" }, "growth": { "v": 1, "sourceId": "source-slot-b-run-b", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "min", "responseLabel": "OD600", "window": [ 30, 150 ] }, "readings": [ { "id": "b-1", "sourceRow": 1, "time": 30, "response": 0.14, "role": "sample" }, { "id": "b-2", "sourceRow": 2, "time": 90, "response": 0.29, "role": "sample" }, { "id": "b-3", "sourceRow": 3, "time": 150, "response": 0.61, "role": "sample" } ], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:5955b326c14992f07b30f5618f4e10fad27646c998624faeb111b612d64c8fb3", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 30, "sourceTimeUnit": "min", "basis": "Inoculation at 30 min after pre-warm" } } }, "expected": { "ok": false, "stage": "validate", "code": "invalid-growth-review-payload", "rule": "slotB: the imported file is not a valid drybench.growth-review v1" } }, { "id": "refuse-source-input-hash", "kind": "refusal", "description": "Source A's first response changed from 0.15 to 0.65 after its source.inputHash and payloadHash were recorded. The record reads; verification refuses it. Creating a slot from this imported file refuses with the same code.", "operation": "verify", "input": { "v": 1, "kind": "measured-comparison", "sharedEventLabel": "Inoculation (OD600 = 0.15)", "slotA": { "slotId": "slot-a", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run A (hours)", "analysisRef": null, "revision": null, "inputHash": "sha256:0128fe82bc998798c63513a46d1a0d7b0dc4d7ed8eac3507c83b49eb3fd27003" }, "growth": { "v": 1, "sourceId": "source-slot-a-run-a", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "h", "responseLabel": "OD600", "window": [ 0, 2 ] }, "readings": [ { "id": "a-1", "sourceRow": 1, "time": 0, "response": 0.65, "role": "sample" }, { "id": "a-2", "sourceRow": 2, "time": 1, "response": 0.31, "role": "sample" }, { "id": "a-3", "sourceRow": 3, "time": 2, "response": 0.64, "role": "sample" } ], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:6d4f7385ff1c09604508e62b0265a0d82880058483e6243772b5fe0d0ca9e6ce", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 0, "sourceTimeUnit": "h", "basis": "Inoculation recorded at 0 h in bench log" } }, "slotB": { "slotId": "slot-b", "imported": { "schema": "drybench.growth-review", "v": 1, "capturedAt": "2026-10-24T09:00:00.000Z", "source": { "label": "Run B (minutes)", "analysisRef": null, "revision": null, "inputHash": "sha256:a294ba4c895209f9c19297e04363b4fe314aae460ece0c30c37168fca07d386e" }, "growth": { "v": 1, "sourceId": "source-slot-b-run-b", "source": { "kind": "paste", "at": "2026-10-24T09:00:00.000Z" }, "settings": { "timeUnit": "min", "responseLabel": "OD600", "window": [ 30, 150 ] }, "readings": [ { "id": "b-1", "sourceRow": 1, "time": 30, "response": 0.14, "role": "sample" }, { "id": "b-2", "sourceRow": 2, "time": 90, "response": 0.29, "role": "sample" }, { "id": "b-3", "sourceRow": 3, "time": 150, "response": 0.61, "role": "sample" } ], "result": null }, "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} } }, "payloadHash": "sha256:b57f11c262effd792333dea6fa4e398d007c4aef5a0a9e2f2c8bc8ce2d4095c1", "context": { "origin": "measured", "responseUnit": "OD600", "basis": "1 cm cuvette, unblanked", "timeZero": null, "instrument": null, "geometry": null, "validRange": null, "calibration": null, "calibrationUncertainty": null, "processEvents": null, "sampleIds": {} }, "alignment": { "kind": "elapsed-from-declared-event", "anchorInSourceUnits": 30, "sourceTimeUnit": "min", "basis": "Inoculation at 30 min after pre-warm" } } }, "expected": { "ok": false, "stage": "verify", "code": "source-input-hash-mismatch", "rule": "slotA: source.inputHash is not the hash of the growth input", "createSlot": { "slotA": "source-input-hash-mismatch", "slotB": "ok" } } }, { "id": "refuse-payload-hash", "kind": "refusal", "description": "Source B's imported context (instrument) changed after its payloadHash was recorded; source.inputHash still matches the growth input. 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