{
 "about": {
  "method": "nonlinear-coverage",
  "origin": "Simulated replicates, seeded; not experimental data",
  "ruling": "CSO memo of 13 October 2026 (docs/board/memos/2026-10-13-cso-nonlinear-families.md), ruling 17; known issue SCI-90",
  "settings": {
   "level": 0.95,
   "replicates": 2000,
   "profileReplicates": 100,
   "gate": "every quantity's coverage >= 0.9",
   "seed": "numpy default_rng([20261013, family index, replicate])",
   "estimate": "scipy.optimize.least_squares (trf) from the memo's start grid and boxes; no estimate on non-convergence, unidentified minima, a box, K_fast above 10^3/dX, ruling 10's coverage rules or d's profile at 0 below the threshold",
   "coverage": "the profiled RSS at the true value against RSS_min (1 + F(L; 1, n - p)/(n - p)): the profile interval's membership test (exact for a connected profile set)",
   "unresolved": "full profile (steps 0.02, 0.04, ... in scaled units) on the first replicates: sides that do not cross"
  },
  "cleared": {
   "growth": true,
   "one-phase": true,
   "two-phase": true,
   "power": true,
   "boltzmann": true
  },
  "recordedOn": "2026-10-13",
  "script": "pipeline/assay-analyser/oracles/nonlinear_coverage.py",
  "scriptSha256": "ffb36dd5478b3365d841fdbd14b653692500e73b96dfd6d3462cad413de2e420",
  "helper": {
   "script": "pipeline/assay-analyser/oracles/stage_a_oracle.py",
   "sha256": "492d85ca2fa6750db80b1c64214fd4a0b13cd4c588267244f6262c504c73e3e8"
  },
  "environment": {
   "image": "ghcr.io/biotechmat/drybench/oracle-env:11b8a5e4456df7eb@sha256:7e69891ca1d9f24838660e0a9887bdb654ce7771d2f2ac7e7275e9b1eb3b6a09",
   "r": "R version 4.4.3 (2025-02-28)",
   "packages": {},
   "python": "3.11.15",
   "numpy": "2.0.2",
   "scipy": "1.13.1",
   "recordedOn": "2026-10-13",
   "cpu": "AMD EPYC 9V74 80-Core Processor",
   "cpuClass": "x86-64-v3",
   "simd": [
    "SSSE3",
    "SSE41",
    "POPCNT",
    "SSE42",
    "AVX",
    "F16C",
    "FMA3",
    "AVX2"
   ],
   "openblasCore": "Haswell",
   "threads": 1
  }
 },
 "oracle": {
  "engine": "SciPy least_squares and scipy.stats.f",
  "method": "simulation; the engine is not involved"
 },
 "families": {
  "growth": {
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    "true": {
     "Y0": 50.0,
     "k": 0.3
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    "noiseSd": 19.085536923187668
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   "replicates": 2000,
   "estimable": 2000,
   "noEstimate": {},
   "quantities": {
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     "covered": 1895,
     "of": 2000,
     "coverage": 0.9475,
     "wilson95": [
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      0.9564450329748887
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    "lnk": {
     "covered": 1896,
     "of": 2000,
     "coverage": 0.948,
     "wilson95": [
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   "unresolvedSides": {
    "replicates": 100,
    "sides": 400,
    "unresolved": 0,
    "fraction": 0.0
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   "minimumCoverage": 0.9475,
   "cleared": true
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    "true": {
     "Y0": 100.0,
     "Plateau": 10.0,
     "k": 0.5
    },
    "noiseSd": 1.8
   },
   "replicates": 2000,
   "estimable": 2000,
   "noEstimate": {},
   "quantities": {
    "Y0": {
     "covered": 1894,
     "of": 2000,
     "coverage": 0.947,
     "wilson95": [
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      0.9559895427942029
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    },
    "Plateau": {
     "covered": 1891,
     "of": 2000,
     "coverage": 0.9455,
     "wilson95": [
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    },
    "lnk": {
     "covered": 1890,
     "of": 2000,
     "coverage": 0.945,
     "wilson95": [
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   },
   "unresolvedSides": {
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    "sides": 600,
    "unresolved": 0,
    "fraction": 0.0
   },
   "minimumCoverage": 0.945,
   "cleared": true
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    "true": {
     "Y0": 100.0,
     "Plateau": 5.0,
     "f": 0.6,
     "Kfast": 2.0,
     "Kslow": 0.1
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    "noiseSd": 1.9
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   "replicates": 2000,
   "estimable": 2000,
   "noEstimate": {},
   "quantities": {
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     "of": 2000,
     "coverage": 0.9555,
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    "lnKslow": {
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     "coverage": 0.954,
     "wilson95": [
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    "d": {
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   "unresolvedSides": {
    "replicates": 100,
    "sides": 1000,
    "unresolved": 0,
    "fraction": 0.0
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   "minimumCoverage": 0.946,
   "cleared": true
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  "power": {
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    "true": {
     "A": 10.0,
     "B": -0.75
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    "noiseSd": 0.32
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   "replicates": 2000,
   "estimable": 2000,
   "noEstimate": {},
   "quantities": {
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     "covered": 1901,
     "of": 2000,
     "coverage": 0.9505,
     "wilson95": [
      0.9400999950103993,
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    "B": {
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     "coverage": 0.95,
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     "coverage": 0.9465,
     "wilson95": [
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   "unresolvedSides": {
    "replicates": 100,
    "sides": 400,
    "unresolved": 0,
    "fraction": 0.0
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   "cleared": true
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     "Bottom": 1000.0,
     "Top": 9000.0,
     "V50": 52.0,
     "Slope": 1.8
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    "noiseSd": 160.0
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   "estimable": 2000,
   "noEstimate": {},
   "quantities": {
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     "coverage": 0.951,
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   "minimumCoverage": 0.945,
   "cleared": true
  }
 }
}